SMaHT Data

SMaHT Data Overview

Below is an overview of the major data types proposed by each center. The diagram and table below highlight the connections between the data-generating centers, sequencing platforms, experimental assays, variants and other molecular features that will be profiled by the SMaHT Network and made available on the SMaHT Data Portal.

Discover more about SMaHT data by hovering, dragging, and clicking on different parts of the diagram below.

Note: for the best experience, please view the visualization below on a tablet or desktop.

GCC/TTDSequencing PlatformAssay TypeMolecular Features

Technologies and assays are proposed and are not final.

SMaHT Benchmarking Experimental Assays

Below is a summary of experimental assays proposed by each center for the benchmarking experiments.

Discover more about the assays proposed by each center by hovering over the numbers in the table. Hover over assay names for additional information.

Note: for the best experience, please view the visualization below on a tablet or desktop.

Bulk WGS	Bulk RNA-Seq	NanoSeq	NT-Seq	snRNA-Seq	CODEC	DLP+	ppmSeq	Fiber-Seq	Hi-C	Kinnex	10X Genomics Xenium	STORM-Seq	Tranquil-Seq	CompDuplex-Seq	MALBAC-amplified WGS	TEnCATS	ATAC-Seq	HiDEF-Seq	VISTA-Seq	scDip-C	HAT-Seq	L1-ONT	PTA-amplified WGS	Strand-Seq	varCUT&Tag	Slide-tags snRNA-Seq	GoT-ChA
BCM	3	1	1	1	1
BROAD	2	1				1
NYGC	2	1					1	1
UWSC	4								1	1	1
WASHU	2	1										1	1	1
BCM1	1														1
UMICH	1															2	1
BCH1	1					1												1
NYU																			1
BCH2																				1
CWRU																					1
DFCI																						1	1
MAYO	3																							1
STFD	2																							1	1
UMASS																										1
BROAD1																											1
WCNYGC																												1

Scroll to the right to view more assays.
Hover over assay types to see additional details.

Number of sequencing platforms used in benchmarking experiments.