SMaHT Data

SMaHT Data Overview

Below is an overview of the major data types proposed by the GCCs. The diagram and table below highlight the connections between the data-generating centers including GCCs, sequencing platforms, experimental assays, and variants and other molecular features that will be profiled by the SMaHT Network and made available on the SMaHT Data Portal.

Discover more about SMaHT data by hovering, dragging, and clicking on different parts of the diagram below.

Note: for the best experience, please view the visualization below on a tablet or desktop.

Technologies and assays are proposed and are not final.

SMaHT Benchmarking Experimental Assays

Below is a summary of experimental assays proposed by each GCC for the benchmarking experiments.

Discover more about the assays proposed by each GCC by hovering over the numbers in the table. Hover over assay names for additional information.

Note: for the best experience, please view the visualization below on a tablet or desktop.

Bulk WGS	Bulk RNA-Seq	NanoSeq	NT-Seq	snRNA-Seq	CODEC	Duplex sequencing	DLP+	Fiber-Seq	MAS-ISO-Seq	Hi-C	10X Genomics Xenium	STORM-Seq	Tranquil-Seq	CompDuplex-Seq	scCompDuplex-Seq	MALBAC-amplifed WGS	TEnCATS
BCM-GCC	3	1	1	1	1
Broad	2	1				1
NYGC	1	1					1	1
UW	4								1	1	1
WashU	3	1										1	1	1
BCM-TTD															1	1
UMich																	2	1

Hover over assay types to see additional details.

Number of sequencing platforms used in benchmarking experiments.