{"title": "Getting dbGAP Access", "status": "open", "content": [{"file": "/docs/source/getting_dbgap_access.rst", "title": "Getting dbGAP Access - Coming Soon", "status": "open", "options": {"filetype": "rst", "collapsible": false, "default_open": true, "convert_ext_links": true}, "consortia": [{"display_title": "SMaHT", "@id": "/consortia/358aed10-9b9d-4e26-ab84-4bd162da182b/", "uuid": "358aed10-9b9d-4e26-ab84-4bd162da182b", "@type": ["Consortium", "Item"], "status": "open", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "identifier": "getting_dbgap_access", "date_created": "2025-10-10T16:21:10.871112+00:00", "section_type": "Page Section", "submitted_by": {"error": "no view permissions"}, "last_modified": {"modified_by": {"error": "no view permissions"}, "date_modified": "2026-08-21T02:19:03.516425+00:00"}, "schema_version": "1", "submission_centers": [{"display_title": "HMS DAC", "uuid": "9626d82e-8110-4213-ac75-0a50adf890ff", "status": "open", "@type": ["SubmissionCenter", "Item"], "@id": "/submission-centers/9626d82e-8110-4213-ac75-0a50adf890ff/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "@id": "/static-sections/f8b1b363-5530-4109-83c2-7b94acbc0e18/", "@type": ["StaticSection", "UserContent", "Item"], "uuid": "f8b1b363-5530-4109-83c2-7b94acbc0e18", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "display_title": "Getting dbGAP Access - Coming Soon", "content_as_html": "<div class=\"rst-container\"><p>The SMaHT datasets were generated as part of the NIH Common Fund consortium initiative, Somatic Mosaicism across Human Tissues (SMaHT).</p><p>The SMaHT datasets are submitted under dbGaP studies (<a class=\"reference external\" href=\"http://www.ncbi.nlm.nih.gov/gap\" target=\"_blank\" rel=\"noopener noreferrer\">http://www.ncbi.nlm.nih.gov/gap</a>), with the study accession numbers, <strong>phs004193</strong> for the SMaHT Benchmarking data, and <strong>phs004194</strong> for the SMaHT Production data. The datasets were provided by the SMaHT Data Analysis Center (DAC) [1UM1DA058230] on behalf of the SMaHT Network.</p><p>We are in the process of releasing the SMaHT studies on dbGaP. Instructions on how to get protected data permission from dbGaP are coming soon.</p></div>", "content": "The SMaHT datasets were generated as part of the NIH Common Fund consortium initiative, Somatic Mosaicism across Human Tissues (SMaHT).\n\nThe SMaHT datasets are submitted under dbGaP studies (http://www.ncbi.nlm.nih.gov/gap), with the study accession numbers, **phs004193** for the SMaHT Benchmarking data, and **phs004194** for the SMaHT Production data. The datasets were provided by the SMaHT Data Analysis Center (DAC) [1UM1DA058230] on behalf of the SMaHT Network.\n\nWe are in the process of releasing the SMaHT studies on dbGaP. Instructions on how to get protected data permission from dbGaP are coming soon.", "filetype": "rst"}], "consortia": [{"@type": ["Consortium", "Item"], "status": "open", "@id": "/consortia/358aed10-9b9d-4e26-ab84-4bd162da182b/", "uuid": "358aed10-9b9d-4e26-ab84-4bd162da182b", "display_title": "SMaHT", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "identifier": "docs/access/getting-dbgap-access", "date_created": "2025-10-10T16:21:27.155470+00:00", "last_modified": {"modified_by": {"error": "no view permissions"}, "date_modified": "2026-08-21T02:19:45.538119+00:00"}, "schema_version": "1", "table-of-contents": {"enabled": false, "skip-depth": 1, "header-depth": 4, "include-top-link": false}, "submission_centers": [{"status": "open", "@type": ["SubmissionCenter", "Item"], "@id": "/submission-centers/9626d82e-8110-4213-ac75-0a50adf890ff/", "uuid": "9626d82e-8110-4213-ac75-0a50adf890ff", "display_title": "HMS DAC", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "@id": "/docs/access/getting-dbgap-access", "@type": ["DocsAccessGetting-dbgap-accessPage", "DocsAccessPage", "DocsPage", "StaticPage", "Portal"], "uuid": "2a3f6d44-d5cc-43bd-b1c5-480a808a36d0", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "display_title": "Getting dbGAP Access", "@context": "/docs/access/getting-dbgap-access", "is_leaf": true, "toc": {"enabled": false, "skip-depth": 1, "header-depth": 4, "include-top-link": false}, "previous": {"identifier": "docs/access/data-availability-and-access", "title": "Data Availability and Access", "status": "open", "content": [{"@type": ["StaticSection", "UserContent", "Item"], "status": "open", "@id": "/static-sections/550230b3-34fe-42cf-8fb8-72fad10b9861/", "display_title": "SMaHT Data Availability and Access", "uuid": "550230b3-34fe-42cf-8fb8-72fad10b9861", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "consortia": [{"@type": ["Consortium", "Item"], "status": "open", "uuid": "358aed10-9b9d-4e26-ab84-4bd162da182b", "@id": "/consortia/358aed10-9b9d-4e26-ab84-4bd162da182b/", "display_title": "SMaHT", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "date_created": "2025-10-10T16:21:26.968864+00:00", "last_modified": {"modified_by": {"error": "no view permissions"}, "date_modified": "2026-08-21T02:19:45.467972+00:00"}, "schema_version": "1", "table-of-contents": {"enabled": false, "skip-depth": 1, "header-depth": 4, "include-top-link": false}, "submission_centers": [{"display_title": "HMS DAC", "uuid": "9626d82e-8110-4213-ac75-0a50adf890ff", "@type": ["SubmissionCenter", "Item"], "@id": "/submission-centers/9626d82e-8110-4213-ac75-0a50adf890ff/", "status": "open", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "@id": "/docs/access/data-availability-and-access", "@type": ["DocsAccessData-availability-and-accessPage", "DocsAccessPage", "DocsPage", "StaticPage", "Portal"], "uuid": "6c1d10cd-0627-40f5-897c-c96c89023b29", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "display_title": "Data Availability and Access", "is_leaf": true, "sibling_length": 6, "sibling_position": 4}, "parent": {"identifier": "docs/access", "parent": {"identifier": "docs", "parent": {"identifier": "", "@id": "/", "display_title": "Home", "@type": ["DirectoryPage", "StaticPage", "Portal"]}, "@id": "/docs", "uuid": "089319c4-3ce9-4ec1-bd0b-5451a48bd99e", "display_title": "Documentation", "@type": ["DocsPage", "DirectoryPage", "StaticPage", "Portal"], "sibling_length": 6, "sibling_position": 3}, "title": "Access", "status": "open", "consortia": [{"@type": ["Consortium", "Item"], "uuid": "358aed10-9b9d-4e26-ab84-4bd162da182b", "display_title": "SMaHT", "@id": "/consortia/358aed10-9b9d-4e26-ab84-4bd162da182b/", "status": "open", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "date_created": "2024-05-29T01:43:12.878026+00:00", "submitted_by": {"error": "no view permissions"}, "last_modified": {"modified_by": {"error": "no view permissions"}, "date_modified": "2026-08-21T02:19:45.174451+00:00"}, "schema_version": "1", "table-of-contents": {"enabled": true, "skip-depth": 1, "header-depth": 4, "include-top-link": false}, "submission_centers": [{"status": "open", "@id": "/submission-centers/9626d82e-8110-4213-ac75-0a50adf890ff/", "@type": ["SubmissionCenter", "Item"], "display_title": "HMS DAC", "uuid": "9626d82e-8110-4213-ac75-0a50adf890ff", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "@id": "/docs/access", "@type": ["DocsAccessPage", "DocsPage", "DirectoryPage", "StaticPage", "Portal"], "uuid": "39cbfcb1-ba80-4968-85e0-b668b4b04f9f", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "display_title": "Access", "sibling_length": 3, "sibling_position": 0}, "sibling_length": 6, "sibling_position": 5}