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number of reads that failed vendor QC", "derived_from": "rnaseqc:failed_vendor_qc", "value": 0, "key": "Failed Vendor QC [RNA-SeQC]"}, {"visible": true, "tooltip": "The number of mapped reads", "derived_from": "rnaseqc:mapped_reads", "value": 200567586, "key": "Mapped Reads [RNA-SeQC]"}, {"tooltip": "The number of uniquely mapped reads", "derived_from": "rnaseqc:mapped_unique_reads", "value": 170297363, "key": "Mapped Unique Reads [RNA-SeQC]"}, {"tooltip": "The number of rRNA reads", "derived_from": "rnaseqc:rrna_reads", "value": 5629, "key": "rRNA Reads [RNA-SeQC]"}, {"visible": true, "tooltip": "The number of total mapped pairs", "derived_from": "rnaseqc:total_mapped_pairs", "value": 99548702, "key": "Total Mapped Pairs [RNA-SeQC]"}, {"visible": true, "tooltip": "The number of total alignments, including secondary alignments or platform/vendor QC failing reads", "derived_from": "rnaseqc:total_reads", "value": 223784898, "key": "Total Alignments [RNA-SeQC]"}, {"tooltip": "The number of unpaired reads", "derived_from": "rnaseqc:unpaired_reads", "value": 0, "key": "Unpaired Reads [RNA-SeQC]"}, {"tooltip": "The longest aligned length observed in any read", "derived_from": "rnaseqc:read_length", "value": 151, "key": "Read Length [RNA-SeQC]"}, {"flag": "Pass", "visible": true, "tooltip": "The number of genes which had at least 5 unambiguous reads", "derived_from": "rnaseqc:genes_detected", "value": 26336, "key": "Genes Detected [RNA-SeQC]"}, {"flag": "Pass", "visible": true, "tooltip": "An estimation of the number of unique cDNA fragments present in the library. 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A gene with even coverage in both it's 3' and 5' windows would have a bias of 0.5; bias near 1 or 0 may indicate degradation", "derived_from": "rnaseqc:mean_3p_bias", "value": 0.432321, "key": "Mean 3' Bias [RNA-SeQC]"}, {"visible": true, "tooltip": "3' Bias statistics (Median): These aggregate statistics are based on the total coverage in 100 bp windows on both the 3' and 5' ends of a gene. The windows are both offset 150 bases into the gene. This computation is only performed on genes at least 600bp long and with at least 5 unambiguous reads. A gene with even coverage in both it's 3' and 5' windows would have a bias of 0.5; bias near 1 or 0 may indicate degradation", "derived_from": "rnaseqc:median_3p_bias", "value": 0.399788, "key": "Median 3' Bias [RNA-SeQC]"}, {"tooltip": "3' Bias statistics (Std Deviation): These aggregate statistics are based on the total coverage in 100 bp windows on both the 3' and 5' ends of a gene. The windows are both offset 150 bases into the gene. This computation is only performed on genes at least 600bp long and with at least 5 unambiguous reads. A gene with even coverage in both it's 3' and 5' windows would have a bias of 0.5; bias near 1 or 0 may indicate degradation", "derived_from": "rnaseqc:3p_bias_std", "value": 0.284983, "key": "3' Bias, Std [RNA-SeQC]"}, {"tooltip": "3' Bias statistics (Median Absolute Deviation): These aggregate statistics are based on the total coverage in 100 bp windows on both the 3' and 5' ends of a gene. The windows are both offset 150 bases into the gene. This computation is only performed on genes at least 600bp long and with at least 5 unambiguous reads. A gene with even coverage in both it's 3' and 5' windows would have a bias of 0.5; bias near 1 or 0 may indicate degradation", "derived_from": "rnaseqc:3p_bias_mad_std", "value": 0.343125, "key": "3' Bias, MAD Std [RNA-SeQC]"}, {"tooltip": "3' Bias statistics (25th percentile): These aggregate statistics are based on the total coverage in 100 bp windows on both the 3' and 5' ends of a gene. The windows are both offset 150 bases into the gene. This computation is only performed on genes at least 600bp long and with at least 5 unambiguous reads. A gene with even coverage in both it's 3' and 5' windows would have a bias of 0.5; bias near 1 or 0 may indicate degradation", "derived_from": "rnaseqc:3p_bias_25th_percentile", "value": 0.184615, "key": "3' Bias, 25th Percentile [RNA-SeQC]"}, {"tooltip": "3' Bias statistics (75th percentile): These aggregate statistics are based on the total coverage in 100 bp windows on both the 3' and 5' ends of a gene. The windows are both offset 150 bases into the gene. This computation is only performed on genes at least 600bp long and with at least 5 unambiguous reads. A gene with even coverage in both it's 3' and 5' windows would have a bias of 0.5; bias near 1 or 0 may indicate degradation", "derived_from": "rnaseqc:3p_bias_75th_percentile", "value": 0.653846, "key": "3' Bias, 75th Percentile [RNA-SeQC]"}, {"flag": "Pass", "visible": true, "tooltip": "The proportion of exonic and intronic reads", "derived_from": "rnaseqc:exonic_intron_ratio", "value": 0.7736507368657305, "key": "Exonic/Intron Ratio [RNA-SeQC]"}, {"tooltip": "The number of genes with >0 reads", "derived_from": "rnaseqc:genes_with_>0_reads", "value": 35804, "key": "Genes with >0 Reads [RNA-SeQC]"}, {"tooltip": "The number of genes with >=2 reads", "derived_from": "rnaseqc:genes_with_>2_reads", "value": 32530, "key": "Genes with >=2 Reads [RNA-SeQC]"}, {"tooltip": "The number of genes with >=10 reads", "derived_from": "rnaseqc:genes_with_>10_reads", "value": 23452, "key": "Genes with >=10 Reads [RNA-SeQC]"}, {"tooltip": "The number of exons with >0 reads", "derived_from": 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