Somatic Mosaicism across Human Tissues Data Portal

A platform to search, visualize, and download somatic mosaic variants in normal tissues.

Latest Release:

Benchmarking - with all technologies

CellLines

Assays

Mutations

FilesGenerated

Production - with core + additional technologies

CELL LINES & TISSUES

Ectoderm Tissues
  • Brain: unrelated donors iconBrain: unrelated donors
  • Sun-exposed skin iconSun-exposed skin
Endoderm Tissues
  • Liver iconLiver
  • Lung iconLung
  • Colon iconColon
Cell Line Mixtures
  • COLO829 Mixture iconCOLO829 Mixture
  • HapMap Mixture iconHapMap Mixture
  • iPSC & Fibroblast iconiPSC & Fibroblast
Human figure diagram

AVAILABLE ASSAYS

Bulk WGS short read
  • Illumina NovaSeq
  • Ultima Genomics
Bulk WGS long read
  • PacBio HiFi
  • ONT
Bulk RNA-seq
  • Illumina NovaSeq
  • MAS-Seq
Single-cell WGS
  • DLP+
  • MALBAC
  • PTA and PTA-HAT-Seq
  • Cas9-targeted seq
Single-cell RNA-Seq
  • snRNA-Seq
  • STORM-Seq
  • Tranquil-Seq
Single-molecule/duplex WGS
  • Nanoseq
  • CODEC
  • Duplex sequencing
  • HiDEF-Seq
  • CompDuplex-Seq
Epigenome profiling
  • NT-Seq
  • Fiber-Seq
  • Hi-C
  • GoTchA
  • ATAC-Seq/MetaCS

Data Release Tracker

Announcements

New Features
Explore the Interactive QC Assessment page for data on the portal.
Attention Users
The V1 Benchmarking data portal will be open to SMaHT consortium members only at this time.
Data-related news
  • The raw sequence files, i.e. unaligned BAM and FASTQ, and the data from the benchmarking tissue samples that were not distributed by TPC will be available upon request at this time (through Globus).
  • The SMaHT Data Portal, V1 Benchmarking release, now makes benchmarking data available for download for authenticated consortium members. Users can continue to obtain the access keys for metadata submission.